Links

Element used to represent links that are related to a submission section. A link doesn’t necessarily mean a web page but it can also relate to other elements like genes, expressions, FTP locations, etc.

Whenever a link is defined, it’ll be attached to the immediately previously defined section or subsection. Links can be represented in two ways: single link or links table.

Single Link

Represents a single link related to a section or subsection. The reserved word Link is used to define a single link.

Syntax

Link	URL
<Attributes>

Examples

Link	ftp://ftp.biostudies.ebi.ac.uk/pub/S-BSMS/S-BSMS0-99/S-BSMS6/raw_data
Type	Raw data

{
  "section": {
    "links": [{
      "url": "ftp://ftp.biostudies.ebi.ac.uk/pub/S-BSMS/S-BSMS0-99/S-BSMS6/raw_data",
      "attributes": [{
        "name": "Type",
        "value": "Raw data"
      }]
    }]
  },
}

<section accno="s-E-MTAB-2950" type="Study">
  <links>
    <link>
      <url>ftp://ftp.biostudies.ebi.ac.uk/pub/S-BSMS/S-BSMS0-99/S-BSMS6/raw_data</url>
      <attributes>
        <attribute>
          <name>Type</name>
          <value>Raw data</value>
        </attribute>
      </attributes>
    </link>
  </links>
</section>

Links Table

Represents a group of links attached to a section or subsection. The reserved word Links is used to define a links table

Syntax

Links	Attr1	Attr2	AttrN
Link1 Url	Attr1 Value	Attr2 Value	AttrN Value
Link2 Url	Attr1 Value	Attr2 Value	AttrN Value
Link3 Url	Attr1 Value	Attr2 Value	AttrN Value

Examples

Links	Description	Type
ERP007058	ENA Project	ENA
ERR632210-ERR632217	ENA Runs	ENA

{
  "section": {
    "links": [[{
      "url": "ERP007058",
      "attributes": [{
        "name": "Description",
        "value": "ENA Project"
      }, {
        "name": "Type",
        "value": "ENA"
      }]
    }, {
      "url": "ERR632210",
      "attributes": [{
        "name": "Description",
        "value": "ENA Runs"
      }, {
        "name": "Type",
        "value": "ENA"
      }]
    }]]
  }
}

<section accno="s-E-MTAB-2950" type="Study">
  <links>
    <table>
      <link>
        <url>ERP007058</url>
        <attributes>
          <attribute>
            <name>Description</name>
            <value>ENA Project</value>
          </attribute>
          <attribute>
            <name>Type</name>
            <value>ENA</value>
          </attribute>
        </attributes>
      </link>
      <link>
        <url>ERR632210</url>
        <attributes>
          <attribute>
            <name>Description</name>
            <value>ENA Runs</value>
          </attribute>
          <attribute>
            <name>Type</name>
            <value>ENA</value>
          </attribute>
        </attributes>
      </link>
    </table>
  </links>
</section>

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Last updated 4 years ago

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Syntax

Examples